Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
alkbh5AlkB homolog 5, RNA demethylase. (357 aa)    
Predicted Functional Partners:
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.990
wtap
WT1 associated protein.
   
  
 0.965
mettl14
Methyltransferase like 14; Belongs to the MT-A70-like family.
   
  
 0.957
ythdf2
YTH N(6)-methyladenosine RNA binding protein 2.
      
 0.950
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
      
 0.921
ythdc1
YTH domain containing 1.
      
 0.910
YTHDC2
YTH domain containing 2.
     
 0.910
rbm15
RNA binding motif protein 15.
      
 0.899
ythdf3
YTH N(6)-methyladenosine RNA binding protein 3.
      
 0.888
zc3h13
Zinc finger CCCH-type containing 13.
      
 0.866
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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