Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dpy19l3Dpy-19 like C-mannosyltransferase 3. (767 aa)    
Predicted Functional Partners:
tsr3
Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.748
ccdc126
Coiled-coil domain containing 126.
      
 0.688
tsr2
TSR2 ribosome maturation factor.
      
 0.606
pofut2
Protein O-fucosyltransferase 2.
      
 0.575
adamts13
ADAM metallopeptidase with thrombospondin type 1 motif, 13.
      
 0.522
adamts16
ADAM metallopeptidase with thrombospondin type 1 motif, 16.
      
 0.497
LOC100711773
Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.
      
 0.492
LOC100694372
Si:dkey-191g9.5.
      
 0.489
RAP1GDS1
Rap1 GTPase-GDP dissociation stimulator 1.
      
 0.489
tsr1
TSR1 ribosome maturation factor.
      
 0.482
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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