Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100698850Protocadherin 17. (1141 aa)    
Predicted Functional Partners:
cadps
Ca2+-dependent activator protein for secretion b.
   
  
 0.730
lrrtm1
Leucine rich repeat transmembrane neuronal 1.
     
 0.708
kctd2
Potassium channel tetramerization domain containing 2.
    
 
 0.706
kcns3
Potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3b; Belongs to the potassium channel family.
      
 0.704
KCNG3
Potassium voltage-gated channel modifier subfamily G member 3; Belongs to the potassium channel family.
      
 0.704
LOC100699154
Cell adhesion molecule 1b.
     
 0.565
grm2
Glutamate receptor, metabotropic 2a.
      
 0.554
mgrn1
Mahogunin, ring finger 1b.
      
 0.551
Snd1
Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.
      
 0.492
sncg
Gamma-synuclein; Belongs to the synuclein family.
   
  
 0.488
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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