Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)    
Predicted Functional Partners:
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
 0.999
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
    
 0.998
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.994
bard1
BRCA1 associated RING domain 1.
    
 
 0.986
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.980
LOC100692710
Cleavage and polyadenylation specific factor 3.
   
 0.980
LOC100706148
FIP1 like 1b (S. cerevisiae).
    
 0.977
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.970
Pcf11
PCF11 cleavage and polyadenylation factor subunit.
     
 0.961
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.955
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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