STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
barx1BARX homeobox 1. (246 aa)    
Predicted Functional Partners:
pax9
Paired box 9.
      
 0.596
osr2
Odd-skipped related transciption factor 2.
    
 0.549
nkx3-2
NK3 homeobox 2.
   
  
0.548
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
   
  
 0.546
bmp4
Bone morphogenetic protein 4.
      
 0.538
ercc4
Excision repair cross-complementation group 4.
     
 0.511
msx1
Muscle segment homeobox 1a.
   
  
0.503
lhx6
LIM homeobox 6.
    
 
 0.491
SYDE1
Synapse defective Rho GTPase homolog 1.
      
 0.487
tbx22
T-box transcription factor 22.
   
 
 0.456
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.