STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDH20Protocadherin 20. (889 aa)    
Predicted Functional Partners:
bricd5
BRICHOS domain containing 5.
      
 0.467
scaper
S-phase cyclin A-associated protein in the ER.
      
 0.439
egfl7
EGF-like-domain, multiple 7.
      
 0.430
I3K7X9_ORENI
Limb and CNS expressed 1.
   
 0.429
LIX1L
Limb and CNS expressed 1 like.
   
 0.429
Fjx1
Four-jointed box kinase 1.
   
 
 0.428
LOC100692879
Fibroblast growth factor binding protein 1b.
  
   
 0.415
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.