Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PCDH20Protocadherin 20. (889 aa)    
Predicted Functional Partners:
LOC100693785
Protocadherin 9.
   
  0.845
LOC100697944
Protocadherin 11.
   
  0.845
LOC100700286
Uncharacterized protein.
   
  0.815
pcdh7
Protocadherin 7b.
   
  0.815
LOC100709358
Protocadherin 7a.
   
  0.815
LOC100693368
Uncharacterized protein.
   
  0.815
LOC100701475
Protocadherin 1a.
   
  0.815
cutc
CutC copper transporter homolog (E. coli).
      
 0.644
bricd5
BRICHOS domain containing 5.
      
 0.620
nbas
Neuroblastoma amplified sequence.
      
 0.616
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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