STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100693785Protocadherin 9. (1236 aa)    
Predicted Functional Partners:
ctnnal1
Catenin (cadherin-associated protein), alpha-like 1.
    
 0.617
ctnna2
Catenin (cadherin-associated protein), alpha 2.
    
 0.583
LOC100695750
Catenin (cadherin-associated protein), delta 1.
   
 0.552
CTNND1
Catenin delta 1.
   
 0.552
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
     
 0.499
TNS3
Tensin-3 isoform X1.
      
 0.474
TNS3-2
Tensin 3.
      
 0.474
Tns1
Tensin 1b.
      
 0.474
TNS1
Tensin 1.
      
 0.474
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.446
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.