STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cwc25CWC25 spliceosome associated protein homolog. (403 aa)    
Predicted Functional Partners:
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
 0.998
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.997
yju2
YJU2 splicing factor homolog.
   
 0.994
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.993
bud31
BUD31 homolog.
    
 
 0.992
LOC100702978
Src homology 2 domain containing transforming protein D, a.
   
 0.991
prpf19
Pre-mRNA processing factor 19.
    
 
 0.989
Cwc22
MI domain-containing protein.
   
 0.982
syf2
SYF2 pre-mRNA-splicing factor.
   
 0.975
prpf8
Pre-mRNA processing factor 8.
    
 
 0.966
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.