Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
hdac11Histone deacetylase 11. (367 aa)    
Predicted Functional Partners:
LOC100706645
Histone H2A; Belongs to the histone H2A family.
   
 0.748
LOC100694115
Histone H2A.Z.
   
 0.748
I3JV04_ORENI
Translocase of outer mitochondrial membrane 20.
    
 0.741
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.741
LOC100702930
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
    
 0.738
LOC100699679
H2A histone family, member Y; Belongs to the histone H2A family.
    
 0.738
I3JW57_ORENI
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.
    
 
 0.722
LOC100700997
Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.
    
 0.718
ncor2
Nuclear receptor corepressor 2.
    
 0.690
ncor1
Nuclear receptor corepressor 1.
    
 0.690
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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