Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100694597Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a. (1894 aa)    
Predicted Functional Partners:
ppp6c
Serine/threonine-protein phosphatase.
    
 0.544
LOC100701794
Serine/threonine-protein phosphatase.
    
 0.544
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.456
LOC100707632
Protein phosphatase 6, regulatory subunit 2a.
    
 0.456
LOC100707429
Protein phosphatase 6, regulatory subunit 2b.
    
 0.456
ift81
Intraflagellar transport 81 homolog.
    
 0.422
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.419
traf7
TNF receptor-associated factor 7.
    
 0.401
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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