STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100694597Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a. (1894 aa)    
Predicted Functional Partners:
ppp6c
Serine/threonine-protein phosphatase.
    
 0.520
LOC100701794
Serine/threonine-protein phosphatase.
    
 0.520
ift81
Intraflagellar transport 81 homolog.
    
 0.500
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.461
LOC100707632
Protein phosphatase 6, regulatory subunit 2a.
    
 0.461
LOC100707429
Protein phosphatase 6, regulatory subunit 2b.
    
 0.461
I3KF91_ORENI
Intraflagellar transport 88 homolog.
    
 0.457
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.452
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.446
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.437
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.