STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I3J5I6_ORENIBRCA1-associated ATM activator 1. (685 aa)    
Predicted Functional Partners:
brca1
Uncharacterized protein.
    
 
 0.685
e4f1
E4F transcription factor 1.
   
    0.613
brap
BRCA1 associated protein.
      
 0.542
LOC100695591
Tonsoku-like, DNA repair protein.
      
 0.480
tp53bp1
Tumor protein p53 binding protein, 1.
      
 0.433
mcm10
Minichromosome maintenance 10 replication initiation factor.
  
   
 0.409
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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