LOC100703750 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100703750

Uncharacterized protein. (1229 aa)

Predicted Functional Partners:

ube3d

0.938

WDR33

0.929

cpsf2

0.925

cpsf1

0.925

cpsf4

0.925

sympk

0.914

LOC100706148

0.910

cstf2

0.904

ENSONIP00000062029

0.900

Pcf11

0.881

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000062029	LOC100703750	ENSONIP00000062029	ENSONIP00000004181	annotation not available	Uncharacterized protein.	0.900
ENSONIP00000062029	LOC100706148	ENSONIP00000062029	ENSONIP00000011044	annotation not available	FIP1 like 1b (S. cerevisiae).	0.910
ENSONIP00000062029	Pcf11	ENSONIP00000062029	ENSONIP00000045236	annotation not available	PCF11 cleavage and polyadenylation factor subunit.	0.881
ENSONIP00000062029	WDR33	ENSONIP00000062029	ENSONIP00000037376	annotation not available	WD repeat domain 33.	0.929
ENSONIP00000062029	cpsf1	ENSONIP00000062029	ENSONIP00000070665	annotation not available	Cleavage and polyadenylation specific factor 1.	0.925
ENSONIP00000062029	cpsf2	ENSONIP00000062029	ENSONIP00000007427	annotation not available	Cleavage and polyadenylation specificity factor subunit 2.	0.925
ENSONIP00000062029	cpsf4	ENSONIP00000062029	ENSONIP00000076211	annotation not available	Cleavage and polyadenylation specific factor 4.	0.925
ENSONIP00000062029	cstf2	ENSONIP00000062029	ENSONIP00000003295	annotation not available	Cleavage stimulation factor, 3' pre-RNA, subunit 2.	0.904
ENSONIP00000062029	sympk	ENSONIP00000062029	ENSONIP00000021173	annotation not available	Symplekin.	0.914
ENSONIP00000062029	ube3d	ENSONIP00000062029	ENSONIP00000000085	annotation not available	Ubiquitin protein ligase E3D.	0.938
LOC100703750	ENSONIP00000062029	ENSONIP00000004181	ENSONIP00000062029	Uncharacterized protein.	annotation not available	0.900
LOC100703750	LOC100706148	ENSONIP00000004181	ENSONIP00000011044	Uncharacterized protein.	FIP1 like 1b (S. cerevisiae).	0.910
LOC100703750	Pcf11	ENSONIP00000004181	ENSONIP00000045236	Uncharacterized protein.	PCF11 cleavage and polyadenylation factor subunit.	0.881
LOC100703750	WDR33	ENSONIP00000004181	ENSONIP00000037376	Uncharacterized protein.	WD repeat domain 33.	0.929
LOC100703750	cpsf1	ENSONIP00000004181	ENSONIP00000070665	Uncharacterized protein.	Cleavage and polyadenylation specific factor 1.	0.925
LOC100703750	cpsf2	ENSONIP00000004181	ENSONIP00000007427	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.925
LOC100703750	cpsf4	ENSONIP00000004181	ENSONIP00000076211	Uncharacterized protein.	Cleavage and polyadenylation specific factor 4.	0.925
LOC100703750	cstf2	ENSONIP00000004181	ENSONIP00000003295	Uncharacterized protein.	Cleavage stimulation factor, 3' pre-RNA, subunit 2.	0.904
LOC100703750	sympk	ENSONIP00000004181	ENSONIP00000021173	Uncharacterized protein.	Symplekin.	0.914
LOC100703750	ube3d	ENSONIP00000004181	ENSONIP00000000085	Uncharacterized protein.	Ubiquitin protein ligase E3D.	0.938