LOC100703750 protein (Oreochromis niloticus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC100703750

Uncharacterized protein. (1229 aa)

Predicted Functional Partners:

Pcf11

0.980

WDR33

0.956

cpsf2

0.946

cpsf4

0.946

cpsf1

0.945

cstf3

0.942

LOC100706148

0.938

sympk

0.938

ENSONIP00000029091

0.932

cstf2

0.915

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000029091	LOC100703750	ENSONIP00000029091	ENSONIP00000004181	annotation not available	Uncharacterized protein.	0.932
ENSONIP00000029091	LOC100706148	ENSONIP00000029091	ENSONIP00000011044	annotation not available	FIP1 like 1b (S. cerevisiae).	0.920
ENSONIP00000029091	WDR33	ENSONIP00000029091	ENSONIP00000037376	annotation not available	WD repeat domain 33.	0.727
ENSONIP00000029091	cpsf1	ENSONIP00000029091	ENSONIP00000070665	annotation not available	Cleavage and polyadenylation specific factor 1.	0.941
ENSONIP00000029091	cpsf2	ENSONIP00000029091	ENSONIP00000007427	annotation not available	Cleavage and polyadenylation specificity factor subunit 2.	0.945
ENSONIP00000029091	cpsf4	ENSONIP00000029091	ENSONIP00000076211	annotation not available	Cleavage and polyadenylation specific factor 4.	0.693
ENSONIP00000029091	cstf2	ENSONIP00000029091	ENSONIP00000003295	annotation not available	Cleavage stimulation factor, 3' pre-RNA, subunit 2.	0.901
ENSONIP00000029091	cstf3	ENSONIP00000029091	ENSONIP00000006994	annotation not available	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	0.942
ENSONIP00000029091	sympk	ENSONIP00000029091	ENSONIP00000021173	annotation not available	Symplekin.	0.942
LOC100703750	ENSONIP00000029091	ENSONIP00000004181	ENSONIP00000029091	Uncharacterized protein.	annotation not available	0.932
LOC100703750	LOC100706148	ENSONIP00000004181	ENSONIP00000011044	Uncharacterized protein.	FIP1 like 1b (S. cerevisiae).	0.938
LOC100703750	Pcf11	ENSONIP00000004181	ENSONIP00000045236	Uncharacterized protein.	PCF11 cleavage and polyadenylation factor subunit.	0.980
LOC100703750	WDR33	ENSONIP00000004181	ENSONIP00000037376	Uncharacterized protein.	WD repeat domain 33.	0.956
LOC100703750	cpsf1	ENSONIP00000004181	ENSONIP00000070665	Uncharacterized protein.	Cleavage and polyadenylation specific factor 1.	0.945
LOC100703750	cpsf2	ENSONIP00000004181	ENSONIP00000007427	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.946
LOC100703750	cpsf4	ENSONIP00000004181	ENSONIP00000076211	Uncharacterized protein.	Cleavage and polyadenylation specific factor 4.	0.946
LOC100703750	cstf2	ENSONIP00000004181	ENSONIP00000003295	Uncharacterized protein.	Cleavage stimulation factor, 3' pre-RNA, subunit 2.	0.915
LOC100703750	cstf3	ENSONIP00000004181	ENSONIP00000006994	Uncharacterized protein.	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	0.942
LOC100703750	sympk	ENSONIP00000004181	ENSONIP00000021173	Uncharacterized protein.	Symplekin.	0.938
LOC100706148	ENSONIP00000029091	ENSONIP00000011044	ENSONIP00000029091	FIP1 like 1b (S. cerevisiae).	annotation not available	0.920