LOC100691191 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC100691191

Uncharacterized protein. (242 aa)

Predicted Functional Partners:

LOC100689790

0.916

Atg16l1

0.916

atg16l2

0.916

uso1

0.741

Stx5

0.736

trappc8

0.734

LOC100702116

0.733

rabggtb

0.725

trappc1

0.716

trappc4

0.695

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg16l1	LOC100689790	ENSONIP00000021742	ENSONIP00000014559	ATG16 autophagy related 16-like 1 (S. cerevisiae).	RAB33B, member RAS oncogene family a.	0.975
Atg16l1	LOC100691191	ENSONIP00000021742	ENSONIP00000004240	ATG16 autophagy related 16-like 1 (S. cerevisiae).	Uncharacterized protein.	0.916
Atg16l1	LOC100702116	ENSONIP00000021742	ENSONIP00000041388	ATG16 autophagy related 16-like 1 (S. cerevisiae).	RAB33A, member RAS oncogene family.	0.921
LOC100689790	Atg16l1	ENSONIP00000014559	ENSONIP00000021742	RAB33B, member RAS oncogene family a.	ATG16 autophagy related 16-like 1 (S. cerevisiae).	0.975
LOC100689790	LOC100691191	ENSONIP00000014559	ENSONIP00000004240	RAB33B, member RAS oncogene family a.	Uncharacterized protein.	0.916
LOC100689790	LOC100702116	ENSONIP00000014559	ENSONIP00000041388	RAB33B, member RAS oncogene family a.	RAB33A, member RAS oncogene family.	0.987
LOC100689790	Stx5	ENSONIP00000014559	ENSONIP00000006788	RAB33B, member RAS oncogene family a.	Syntaxin 5A; Belongs to the syntaxin family.	0.775
LOC100689790	atg16l2	ENSONIP00000014559	ENSONIP00000054441	RAB33B, member RAS oncogene family a.	Autophagy-related protein 16-2 isoform X2.	0.975
LOC100689790	rabggtb	ENSONIP00000014559	ENSONIP00000023115	RAB33B, member RAS oncogene family a.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.810
LOC100689790	trappc1	ENSONIP00000014559	ENSONIP00000059169	RAB33B, member RAS oncogene family a.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.716
LOC100689790	trappc4	ENSONIP00000014559	ENSONIP00000031924	RAB33B, member RAS oncogene family a.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.695
LOC100689790	trappc8	ENSONIP00000014559	ENSONIP00000009626	RAB33B, member RAS oncogene family a.	Trafficking protein particle complex 8.	0.734
LOC100689790	uso1	ENSONIP00000014559	ENSONIP00000065829	RAB33B, member RAS oncogene family a.	USO1 vesicle transport factor.	0.741
LOC100691191	Atg16l1	ENSONIP00000004240	ENSONIP00000021742	Uncharacterized protein.	ATG16 autophagy related 16-like 1 (S. cerevisiae).	0.916
LOC100691191	LOC100689790	ENSONIP00000004240	ENSONIP00000014559	Uncharacterized protein.	RAB33B, member RAS oncogene family a.	0.916
LOC100691191	LOC100702116	ENSONIP00000004240	ENSONIP00000041388	Uncharacterized protein.	RAB33A, member RAS oncogene family.	0.733
LOC100691191	Stx5	ENSONIP00000004240	ENSONIP00000006788	Uncharacterized protein.	Syntaxin 5A; Belongs to the syntaxin family.	0.736
LOC100691191	atg16l2	ENSONIP00000004240	ENSONIP00000054441	Uncharacterized protein.	Autophagy-related protein 16-2 isoform X2.	0.916
LOC100691191	rabggtb	ENSONIP00000004240	ENSONIP00000023115	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.725
LOC100691191	trappc1	ENSONIP00000004240	ENSONIP00000059169	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.716