STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc40Coiled-coil domain containing 40. (965 aa)    
Predicted Functional Partners:
ccdc39
Uncharacterized protein.
   
 
 0.981
I3IV59_ORENI
Cilia and flagella associated protein 43.
   
 
 0.953
I3IV60_ORENI
Cilia and flagella associated protein 43.
   
 
 0.953
LOC100707731
Radial spoke head component 4A.
   
 
 0.943
tekt2
Tektin 2 (testicular).
   
 
 0.936
dnai2
Dynein, axonemal, intermediate chain 2b.
   
 
 0.933
ccdc151
Uncharacterized protein.
    
 0.932
drc1
Uncharacterized protein.
   
 
 0.928
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
   
 
 0.927
armc4
Armadillo repeat containing 4.
   
 
 0.926
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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