Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcdh18Protocadherin 18a. (1198 aa)    
Predicted Functional Partners:
lysmd3
LysM, putative peptidoglycan-binding, domain containing 3.
      
 0.505
klhl32
Kelch-like family member 32.
      
 0.478
Lg9h3orf58
Divergent protein kinase domain 2Ab.
      
 0.445
LOC100694904
Zona pellucida glycoprotein 3f, tandem duplicate 1.
      
 0.425
gpr19
G protein-coupled receptor 19.
      
 0.424
aacs
Acetoacetyl-CoA synthetase.
      
 0.411
rab3ip
RAB3A interacting protein (rabin3).
      
 0.411
rab3il1
RAB3A interacting protein (rabin3)-like 1.
      
 0.411
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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