Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lg6h4orf33Zgc:77739. (222 aa)    
Predicted Functional Partners:
taf11
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
      
 0.846
Mrps18c
Mitochondrial ribosomal protein S18C.
      
 0.757
LOC100709000
Myelin protein zero-like 1 like.
      
 0.699
srrm1
Serine/arginine repetitive matrix 1.
      
 0.690
slc31a2
Solute carrier family 31 member 2.
      
 0.635
zdhhc3
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.635
LOC102081412
Palmitoyltransferase ZDHHC3 isoform X1.
      
 0.635
zfyve19
Zinc finger, FYVE domain containing 19.
      
 0.624
vac14
Vac14 homolog (S. cerevisiae).
    
   0.615
synrg
Synergin, gamma.
      
 0.607
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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