Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100695027Metalloendopeptidase. (988 aa)    
Predicted Functional Partners:
chrd
Chordin; Belongs to the chordin family.
   
 
 0.874
LOC100709620
Procollagen C-endopeptidase enhancer a.
   
 0.601
Pcolce2
Procollagen C-endopeptidase enhancer 2b.
   
 0.601
I3JRY1_ORENI
Procollagen C-endopeptidase enhancer b.
   
 0.601
bmp2
Bone morphogenetic protein 2b.
    
 
 0.468
bmp4
Bone morphogenetic protein 4.
    
 
 0.468
I3JF61_ORENI
Bone morphogenetic protein 16.
    
 
 0.468
HDGF
Heparin binding growth factor.
      
 0.456
LOC100707400
High mobility group box 2a.
      
 0.454
LOC100700790
Uncharacterized protein.
      
 0.454
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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