STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100701922H6 family homeobox 4. (262 aa)    
Predicted Functional Partners:
gramd1b
GRAM domain containing 1Bb.
      
 0.553
I3IUQ0_ORENI
ISY1 splicing factor homolog.
    
   0.524
hinfp
Histone H4 transcription factor.
    
   0.509
ppp1r21
Protein phosphatase 1, regulatory subunit 21.
    
   0.509
LOC100702391
Zgc:112083.
    
   0.509
ENSONIP00000058603
annotation not available
    
   0.509
ENSONIP00000040932
T-box transcription factor TBX1-A.
    
 
 0.418
I3KFM8_ORENI
T-box transcription factor 1.
    
 
 0.418
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.