Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BegainUncharacterized protein. (678 aa)    
Predicted Functional Partners:
sgf29
SAGA complex associated factor 29.
   
 0.790
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.787
I3JV04_ORENI
Translocase of outer mitochondrial membrane 20.
   
 0.771
arid4a
AT rich interactive domain 4A (RBP1-like).
   
 0.771
dmap1
DNA methyltransferase 1 associated protein 1.
   
 0.748
meaf6
MYST/Esa1-associated factor 6.
   
 0.743
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.741
vps72
Vacuolar protein sorting 72 homolog a.
   
 0.736
ruvbl2
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.730
dr1
Down-regulator of transcription 1.
    
 0.729
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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