Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rsad2Radical S-adenosyl methionine domain containing 2. (354 aa)    
Predicted Functional Partners:
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
   
  
 0.983
LOC100709769
Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
   
  
 0.973
ifih1
Interferon induced with helicase C domain 1.
   
  
 0.972
LOC100700930
Ubiquitin specific peptidase 18; Belongs to the peptidase C19 family.
   
  
 0.965
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 
 0.925
fdps
RUN and SH3 domain containing 1; Belongs to the FPP/GGPP synthase family.
     
 0.923
epsti1
Epithelial-stromal interaction protein 1 isoform X2.
   
  
 0.915
LOC109194892
Interferon-induced protein 44-like.
   
  
 0.914
LOC100701136
TLDc domain-containing protein.
   
  
 0.914
LOC100710945
TLDc domain-containing protein.
   
  
 0.914
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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