STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf144aRBR-type E3 ubiquitin transferase. (350 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.747
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.720
ENSONIP00000047919
Ubiquitin B.
    
 0.679
LOC100708998
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.625
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
      
 0.608
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.582
Trappc12
Trafficking protein particle complex 12.
      
 0.574
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.573
Atrip
Uncharacterized protein.
      
 0.499
Birc6
Baculoviral IAP repeat containing 6.
    
 0.498
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.