Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
rnf144aRBR-type E3 ubiquitin transferase. (350 aa)    
Predicted Functional Partners:
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
      
 0.734
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.709
Trappc12
Trafficking protein particle complex 12.
      
 0.702
rps27a
Ribosomal protein S27a.
    
  0.701
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.687
RNF223
Ring finger protein 223.
    
 0.666
Atrip
Uncharacterized protein.
      
 0.653
ENSONIP00000047919
Ubiquitin B.
    
 0.653
tmem129
Transmembrane protein 129, E3 ubiquitin protein ligase.
      
 0.652
LOC100708998
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.622
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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