Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPSF3Cleavage and polyadenylation specific factor 3. (691 aa)    
Predicted Functional Partners:
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
0.998
LOC100706148
FIP1 like 1b (S. cerevisiae).
   
 0.997
WDR33
WD repeat domain 33.
   
 0.997
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.995
sympk
Symplekin.
   
 0.994
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.992
cstf1
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
   
 0.980
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 0.978
Pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.978
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 0.960
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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