Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100701996Uncharacterized protein. (379 aa)    
Predicted Functional Partners:
msgn1
Mesogenin 1.
   
 0.766
LOC100711609
Hairy-related 11.
    
 0.668
I3K2Y5_ORENI
Notochord homeobox.
   
 
 0.631
wnt3a
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.538
LOC100707095
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.538
I3JFU1_ORENI
SRY-box transcription factor 32.
    
 0.515
mixl1
Mix paired-like homeobox.
   
 0.495
xpo7
Exportin 7.
    
 
 0.484
LOC100690228
Protocadherin 8.
   
 
 0.476
cdx4
Caudal type homeobox 4.
   
 
 0.475
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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