STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtpapMitochondrial poly(A) polymerase. (585 aa)    
Predicted Functional Partners:
PNPT1
Polyribonucleotide nucleotidyltransferase 1.
   
  
 0.591
LRPPRC
Leucine-rich pentatricopeptide repeat containing.
      
 0.571
slirp
SRA stem-loop interacting RNA binding protein.
    
 0.540
calcoco2
SKICH domain-containing protein.
    
 
 0.538
LOC100707023
Tax1 (human T-cell leukemia virus type I) binding protein 1a.
    
 
 0.526
grsf1
G-rich RNA sequence binding factor 1.
    
 0.517
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
    
 0.512
LOC100704180
Poly(A) polymerase gamma.
   
  
 0.511
elac2
ElaC ribonuclease Z 2.
      
 0.483
polrmt
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
   
  
 0.480
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (20%) [HD]