STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrpaSmall nuclear ribonucleoprotein polypeptide A. (282 aa)    
Predicted Functional Partners:
Snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.977
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.972
snrpe
Small nuclear ribonucleoprotein E.
   
 0.968
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.965
snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
   
 0.964
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.964
Snrpg
Small nuclear ribonucleoprotein G.
   
 0.963
phf5a
PHD finger protein 5A.
   
 0.960
sf3b6
Splicing factor 3b, subunit 6.
   
 0.960
Snrpf
Small nuclear ribonucleoprotein F.
   
 0.959
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.