STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100699690Uncharacterized protein. (951 aa)    
Predicted Functional Partners:
LOC100702944
Uncharacterized protein.
   
  0.895
LOC100692045
RNA binding motif protein 39b.
   
  0.895
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.759
setd2
SET domain containing 2, histone lysine methyltransferase.
   
 0.733
LOC100692890
RAN binding protein 2.
   
 0.733
prpf4b
Pre-mRNA processing factor 4Bb.
   
   0.722
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.696
prrc2c
Proline-rich coiled-coil 2C.
  
    0.679
I3JF27_ORENI
RNA binding motif protein 25b.
   
 
 0.618
LOC100700642
RNA binding motif protein 25a.
   
 
 0.618
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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