STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr53WD repeat domain 53. (386 aa)    
Predicted Functional Partners:
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
 0.964
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.940
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.926
prpf8
Pre-mRNA processing factor 8.
   
 0.925
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.920
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 0.917
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.909
snrpe
Small nuclear ribonucleoprotein E.
   
 0.906
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.905
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.905
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.