Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC102078035Collagen type XXVI alpha 1 chain. (432 aa)    
Predicted Functional Partners:
mrpl45
Mitochondrial ribosomal protein L45.
      
 0.563
pofut2
Protein O-fucosyltransferase 2.
     
 0.554
TRAPPC2
Trafficking protein particle complex 2.
     
 0.532
serpinh1
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.
    
 0.489
LOC100702644
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.
    
 0.489
nup43
Nucleoporin 43.
     
 0.468
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
      
 0.445
ENSONIP00000065651
Torsin-1A-interacting protein 2 isoform X1.
      
 0.410
Zmat5
Zinc finger, matrin-type 5.
      
 0.403
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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