Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrriq1Uncharacterized protein. (1638 aa)    
Predicted Functional Partners:
ccdc113
DUF4201 domain-containing protein.
   
 
 0.795
smc2
Structural maintenance of chromosomes protein.
   
   0.764
fem1b
Fem-1 homolog b (C. elegans).
    
 0.704
LOC100702951
Transmembrane 4 L six family member 18.
      
 0.677
Efhc1
EF-hand domain (C-terminal) containing 1.
   
 
 0.661
Syce1
Synaptonemal complex central element protein 1 isoform X1.
      
 0.649
Spag17
Uncharacterized protein.
   
 
 0.625
I3JR68_ORENI
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.615
LOC100710479
GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.
      
 0.604
I3K153_ORENI
Uncharacterized protein.
      
 0.604
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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