STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100711830Annexin. (338 aa)    
Predicted Functional Partners:
lcat
Lecithin-cholesterol acyltransferase.
      
 0.472
I3K2U1_ORENI
RAB3 GTPase activating protein subunit 2 (non-catalytic).
      
 0.472
LOC100695535
Phospholipase A2, group XV.
      
 0.472
LOC100702996
Tyrosine hydroxylase 2.
      
 0.443
ttc13
Tetratricopeptide repeat domain 13.
     
 0.430
trim54
Tripartite motif containing 54.
    
 0.412
WDR1
WD repeat domain 1.
   
 
 0.409
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.