Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SH3TC1Uncharacterized protein. (979 aa)    
Predicted Functional Partners:
ENSONIP00000006854
Actin binding LIM protein family, member 2.
      
 0.763
LOC100706213
SH3 domain and tetratricopeptide repeats 2.
      
 0.703
glt8d2
Glycosyltransferase 8 domain containing 2.
      
 0.654
glt8d1
Glycosyltransferase 8 domain containing 1.
      
 0.654
LOC100698262
Calcium channel, voltage-dependent, gamma subunit 5b.
      
 0.648
borcs6
BLOC-1 related complex subunit 6.
      
 0.643
FIG4
FIG4 phosphoinositide 5-phosphatase.
      
 0.640
gdap1
Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.
      
 0.575
vwc2
Von Willebrand factor C domain containing 2.
      
 0.572
LOC100702972
C1q domain-containing protein.
      
 0.539
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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