STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102081275Cadherin-related family member 5b. (743 aa)    
Predicted Functional Partners:
Cdhr2
Uncharacterized protein.
  
0.789
Cdh23
Cadherin-related 23.
   
0.771
ush1c
USH1 protein network component harmonin.
   
 
 0.603
LOC100699852
LHFPL tetraspan subfamily member 3.
   
 0.518
LOC100694250
LHFPL tetraspan subfamily member 4a.
   
 0.518
LOC100699273
LHFPL tetraspan subfamily member 5a.
   
 0.518
LOC109194158
Uncharacterized protein.
   
 0.518
LOC100699212
LHFPL tetraspan subfamily member 5b.
   
 0.518
lhfpl4
LHFPL tetraspan subfamily member 4a.
   
 0.518
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.511
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.