STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNRNPUL1Heterogeneous nuclear ribonucleoprotein U like 1. (867 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.771
LOC100706673
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.771
I3J012_ORENI
Heterogeneous nuclear ribonucleoprotein M.
   
 0.748
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.709
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
     
 0.684
LOC100703628
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.665
I3K6S2_ORENI
EWS RNA-binding protein 1b.
   
 0.659
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
     
 0.654
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
   
 0.653
hnrnph1
Heterogeneous nuclear ribonucleoprotein H1.
   
 0.653
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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