asmt protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

asmt

Acetylserotonin O-methyltransferase. (358 aa)

Predicted Functional Partners:

AANAT

0.966

I3IYX1_ORENI

0.951

I3JNJ6_ORENI

0.938

LOC100703463

0.909

aldh16a1

0.909

aldh2

0.909

cyp1b1

0.909

LOC100698670

0.908

LOC102078289

0.908

LOC100693723

0.908

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AANAT	I3IYX1_ORENI	ENSONIP00000022987	ENSONIP00000001811	Arylalkylamine N-acetyltransferase 1.	Arylalkylamine N-acetyltransferase 2.	0.902
AANAT	I3JNJ6_ORENI	ENSONIP00000022987	ENSONIP00000042484	Arylalkylamine N-acetyltransferase 1.	N-acetyltransferase domain-containing protein.	0.901
AANAT	asmt	ENSONIP00000022987	ENSONIP00000005342	Arylalkylamine N-acetyltransferase 1.	Acetylserotonin O-methyltransferase.	0.966
I3IYX1_ORENI	AANAT	ENSONIP00000001811	ENSONIP00000022987	Arylalkylamine N-acetyltransferase 2.	Arylalkylamine N-acetyltransferase 1.	0.902
I3IYX1_ORENI	I3JNJ6_ORENI	ENSONIP00000001811	ENSONIP00000042484	Arylalkylamine N-acetyltransferase 2.	N-acetyltransferase domain-containing protein.	0.902
I3IYX1_ORENI	asmt	ENSONIP00000001811	ENSONIP00000005342	Arylalkylamine N-acetyltransferase 2.	Acetylserotonin O-methyltransferase.	0.951
I3JNJ6_ORENI	AANAT	ENSONIP00000042484	ENSONIP00000022987	N-acetyltransferase domain-containing protein.	Arylalkylamine N-acetyltransferase 1.	0.901
I3JNJ6_ORENI	I3IYX1_ORENI	ENSONIP00000042484	ENSONIP00000001811	N-acetyltransferase domain-containing protein.	Arylalkylamine N-acetyltransferase 2.	0.902
I3JNJ6_ORENI	asmt	ENSONIP00000042484	ENSONIP00000005342	N-acetyltransferase domain-containing protein.	Acetylserotonin O-methyltransferase.	0.938
LOC100693723	asmt	ENSONIP00000062318	ENSONIP00000005342	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Acetylserotonin O-methyltransferase.	0.908
LOC100698670	asmt	ENSONIP00000010925	ENSONIP00000005342	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Acetylserotonin O-methyltransferase.	0.908
LOC100703463	asmt	ENSONIP00000023425	ENSONIP00000005342	Aldehyde dehydrogenase 9 family, member A1b; Belongs to the aldehyde dehydrogenase family.	Acetylserotonin O-methyltransferase.	0.909
LOC102078289	asmt	ENSONIP00000054826	ENSONIP00000005342	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Acetylserotonin O-methyltransferase.	0.908
aldh16a1	asmt	ENSONIP00000037445	ENSONIP00000005342	Aldehyde dehydrogenase 16 family, member A1.	Acetylserotonin O-methyltransferase.	0.909
aldh2	asmt	ENSONIP00000050125	ENSONIP00000005342	Aldehyde dehydrogenase 2 family member, tandem duplicate 2; Belongs to the aldehyde dehydrogenase family.	Acetylserotonin O-methyltransferase.	0.909
asmt	AANAT	ENSONIP00000005342	ENSONIP00000022987	Acetylserotonin O-methyltransferase.	Arylalkylamine N-acetyltransferase 1.	0.966
asmt	I3IYX1_ORENI	ENSONIP00000005342	ENSONIP00000001811	Acetylserotonin O-methyltransferase.	Arylalkylamine N-acetyltransferase 2.	0.951
asmt	I3JNJ6_ORENI	ENSONIP00000005342	ENSONIP00000042484	Acetylserotonin O-methyltransferase.	N-acetyltransferase domain-containing protein.	0.938
asmt	LOC100693723	ENSONIP00000005342	ENSONIP00000062318	Acetylserotonin O-methyltransferase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.908
asmt	LOC100698670	ENSONIP00000005342	ENSONIP00000010925	Acetylserotonin O-methyltransferase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.908