STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vgll3Vestigial-like family member 3. (345 aa)    
Predicted Functional Partners:
tead3
TEA domain family member 3 b.
      
 0.607
LOC100699203
Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
      
 0.575
tsku
Tsukushi small leucine rich proteoglycan homolog (Xenopus laevis).
      
 0.513
LOC100697286
Phosphatidylinositol binding clathrin assembly protein b.
      
 0.489
LOC100703351
Prostaglandin I2 (prostacyclin) synthase; Belongs to the cytochrome P450 family.
      
 0.488
vgll4
Vestigial-like family member 4b.
      
 0.469
PRSS23
Serine protease 23.
   
  
 0.467
I3KZX5_ORENI
Serine protease; Belongs to the peptidase S1B family.
   
  
 0.467
I3IW97_ORENI
TUB like protein 4b; Belongs to the TUB family.
      
 0.456
I3KHL2_ORENI
A kinase (PRKA) anchor protein 11.
      
 0.456
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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