STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gm2aGM2 ganglioside activator. (195 aa)    
Predicted Functional Partners:
hexa
Beta-hexosaminidase.
    
 0.739
hexb
Beta-hexosaminidase.
    
 0.739
galns
Galactosamine (N-acetyl)-6-sulfatase.
   
  
 0.690
fam149b1
Family with sequence similarity 149 member B1.
    
 0.688
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
   
  
 0.597
etfa
Electron transfer flavoprotein subunit alpha.
      
 0.589
LOC100689819
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.502
OSBPL8
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.502
LOC100708292
Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.
   
  
 0.491
LOC100699240
Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.
   
  
 0.491
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.