STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSONIP00000006264Capicua transcriptional repressor a. (1718 aa)    
Predicted Functional Partners:
LOC100690947
Ataxin 1b.
    
 
 0.718
LOC102079948
Ataxin-1-like.
    
 
 0.718
atxn1
Ataxin 1/1L.
    
 
 0.718
atxn1l
Ataxin 1-like.
    
 
 0.670
rbm17
RNA binding motif protein 17.
      
 0.436
sin3a
SIN3 transcription regulator family member Aa.
   
 
 0.430
sin3b
SIN3 transcription regulator family member B.
   
 
 0.430
LOC100694434
SIN3 transcription regulator family member Ab.
   
 
 0.430
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.