Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yif1bYip1 interacting factor homolog B (S. cerevisiae). (308 aa)    
Predicted Functional Partners:
LOC100690375
Protein YIPF.
   
  
 0.933
yipf1
Protein YIPF.
   
  
 0.933
yipf5
Protein YIPF.
   
 
 0.871
rabac1
PRA1 family protein.
   
 
 0.862
yipf4
Protein YIPF.
   
 
 0.828
selenos
Selenoprotein S.
   
 
 0.796
maea
Macrophage erythroblast attacher.
   
 
 0.746
LOC100710456
ER lumen protein-retaining receptor.
   
 
 0.656
kdelr3
ER lumen protein-retaining receptor.
   
 
 0.656
LOC100712582
ER lumen protein-retaining receptor.
   
 
 0.656
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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