gsx1 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gsx1

GS homeobox 1. (243 aa)

Predicted Functional Partners:

wasf3

0.660

gtf3a

0.633

shisa2

0.604

tagln3

0.539

Abhd10

0.496

cux1

0.487

LOC100707414

0.476

LOC100704063

0.451

LOC100704482

0.444

I3KHI1_ORENI

0.444

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Abhd10	gsx1	ENSONIP00000017815	ENSONIP00000006489	Transgelin 3b.	GS homeobox 1.	0.496
Abhd10	tagln3	ENSONIP00000017815	ENSONIP00000017814	Transgelin 3b.	Transgelin; Belongs to the calponin family.	0.472
I3KHI1_ORENI	gsx1	ENSONIP00000020576	ENSONIP00000006489	Homeobox domain-containing protein.	GS homeobox 1.	0.444
LOC100704063	gsx1	ENSONIP00000010876	ENSONIP00000006489	Pre-B-cell leukemia homeobox 2.	GS homeobox 1.	0.451
LOC100704482	gsx1	ENSONIP00000012308	ENSONIP00000006489	Pre-B-cell leukemia homeobox 1a.	GS homeobox 1.	0.444
LOC100707414	gsx1	ENSONIP00000036067	ENSONIP00000006489	Transcription factor 3a.	GS homeobox 1.	0.476
LOC100707414	gtf3a	ENSONIP00000036067	ENSONIP00000017770	Transcription factor 3a.	General transcription factor IIIA, b.	0.631
LOC100707414	shisa2	ENSONIP00000036067	ENSONIP00000017730	Transcription factor 3a.	Shisa family member 2b.	0.480
LOC100707414	wasf3	ENSONIP00000036067	ENSONIP00000017762	Transcription factor 3a.	WASP family member 3b.	0.480
cux1	gsx1	ENSONIP00000004775	ENSONIP00000006489	Cut-like homeobox 1a.	GS homeobox 1.	0.487
gsx1	Abhd10	ENSONIP00000006489	ENSONIP00000017815	GS homeobox 1.	Transgelin 3b.	0.496
gsx1	I3KHI1_ORENI	ENSONIP00000006489	ENSONIP00000020576	GS homeobox 1.	Homeobox domain-containing protein.	0.444
gsx1	LOC100704063	ENSONIP00000006489	ENSONIP00000010876	GS homeobox 1.	Pre-B-cell leukemia homeobox 2.	0.451
gsx1	LOC100704482	ENSONIP00000006489	ENSONIP00000012308	GS homeobox 1.	Pre-B-cell leukemia homeobox 1a.	0.444
gsx1	LOC100707414	ENSONIP00000006489	ENSONIP00000036067	GS homeobox 1.	Transcription factor 3a.	0.476
gsx1	cux1	ENSONIP00000006489	ENSONIP00000004775	GS homeobox 1.	Cut-like homeobox 1a.	0.487
gsx1	gtf3a	ENSONIP00000006489	ENSONIP00000017770	GS homeobox 1.	General transcription factor IIIA, b.	0.633
gsx1	shisa2	ENSONIP00000006489	ENSONIP00000017730	GS homeobox 1.	Shisa family member 2b.	0.604
gsx1	tagln3	ENSONIP00000006489	ENSONIP00000017814	GS homeobox 1.	Transgelin; Belongs to the calponin family.	0.539
gsx1	wasf3	ENSONIP00000006489	ENSONIP00000017762	GS homeobox 1.	WASP family member 3b.	0.660