STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zbtb20Zinc finger and BTB domain containing 20. (678 aa)    
Predicted Functional Partners:
sox5
SRY-box transcription factor 5.
    
 
 0.633
LOC100701083
Parvalbumin 6; Belongs to the parvalbumin family.
    
 0.615
dcx
Doublecortin.
      
 0.511
nup35
Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.
      
 0.497
fktn
Fukutin.
    
 0.497
fgg
Fibrinogen gamma chain.
      
 0.478
ccdc134
Si:dkey-167k11.5.
    
 0.456
I3IU32_ORENI
Cytochrome c oxidase assembly factor COX18.
    
 
 0.437
timm21
Translocase of inner mitochondrial membrane 21.
      
 0.422
igfals
Shisa family member 9b.
    
 0.407
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.