hspa13 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hspa13

Heat shock protein 70 family, member 13. (479 aa)

Predicted Functional Partners:

bag3

0.915

gak

0.863

hsp90b1

0.861

Hsp90ab1

0.824

hspa12a

0.797

hspa12b

0.795

CLPB

0.787

grpel1

0.786

hspa4l

0.778

hspa9

0.771

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLPB	Hsp90ab1	ENSONIP00000021077	ENSONIP00000032806	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.773
CLPB	grpel1	ENSONIP00000021077	ENSONIP00000058253	ClpB homolog, mitochondrial AAA ATPase chaperonin.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.984
CLPB	hsp90b1	ENSONIP00000021077	ENSONIP00000033403	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 90, beta (grp94), member 1.	0.761
CLPB	hspa12a	ENSONIP00000021077	ENSONIP00000036507	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 12A.	0.787
CLPB	hspa12b	ENSONIP00000021077	ENSONIP00000072455	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 12B.	0.787
CLPB	hspa13	ENSONIP00000021077	ENSONIP00000006547	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 70 family, member 13.	0.787
CLPB	hspa4l	ENSONIP00000021077	ENSONIP00000025366	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 4 like.	0.849
CLPB	hspa9	ENSONIP00000021077	ENSONIP00000005144	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.916
Hsp90ab1	CLPB	ENSONIP00000032806	ENSONIP00000021077	Heat shock protein 90, alpha (cytosolic), class B member 1.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.773
Hsp90ab1	bag3	ENSONIP00000032806	ENSONIP00000077530	Heat shock protein 90, alpha (cytosolic), class B member 1.	BCL2 associated athanogene 3.	0.418
Hsp90ab1	grpel1	ENSONIP00000032806	ENSONIP00000058253	Heat shock protein 90, alpha (cytosolic), class B member 1.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.740
Hsp90ab1	hsp90b1	ENSONIP00000032806	ENSONIP00000033403	Heat shock protein 90, alpha (cytosolic), class B member 1.	Heat shock protein 90, beta (grp94), member 1.	0.931
Hsp90ab1	hspa12a	ENSONIP00000032806	ENSONIP00000036507	Heat shock protein 90, alpha (cytosolic), class B member 1.	Heat shock protein 12A.	0.661
Hsp90ab1	hspa12b	ENSONIP00000032806	ENSONIP00000072455	Heat shock protein 90, alpha (cytosolic), class B member 1.	Heat shock protein 12B.	0.661
Hsp90ab1	hspa13	ENSONIP00000032806	ENSONIP00000006547	Heat shock protein 90, alpha (cytosolic), class B member 1.	Heat shock protein 70 family, member 13.	0.824
Hsp90ab1	hspa4l	ENSONIP00000032806	ENSONIP00000025366	Heat shock protein 90, alpha (cytosolic), class B member 1.	Heat shock protein 4 like.	0.780
Hsp90ab1	hspa9	ENSONIP00000032806	ENSONIP00000005144	Heat shock protein 90, alpha (cytosolic), class B member 1.	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.770
bag3	Hsp90ab1	ENSONIP00000077530	ENSONIP00000032806	BCL2 associated athanogene 3.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.418
bag3	gak	ENSONIP00000077530	ENSONIP00000026888	BCL2 associated athanogene 3.	Cyclin G associated kinase.	0.866
bag3	hsp90b1	ENSONIP00000077530	ENSONIP00000033403	BCL2 associated athanogene 3.	Heat shock protein 90, beta (grp94), member 1.	0.746