Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccnfCyclin F; Belongs to the cyclin family. (786 aa)    
Predicted Functional Partners:
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.993
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.987
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.982
cdc6
Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.
   
 0.979
ccp110
Uncharacterized protein.
    
 
 0.949
LOC100700505
Uncharacterized protein LOC100700505 isoform X1.
    
 
 0.949
ENSONIP00000024680
Nucleolar and spindle associated protein 1.
   
 
 0.932
sqstm1
Sequestosome 1.
    
 
 0.924
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
   
 0.906
mcm3
DNA helicase; Belongs to the MCM family.
   
 0.886
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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