chrdl2 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

chrdl2

Chordin-like 2. (442 aa)

Predicted Functional Partners:

I3KV71_ORENI

0.586

I3J1Y4_ORENI

0.582

LOC100706789

0.582

TWSG1

0.556

bmp2

0.543

bmp4

0.543

I3JF61_ORENI

0.543

I3IVA2_ORENI

0.532

zc3h14

0.518

LOC100708249

0.518

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3IVA2_ORENI	chrdl2	ENSONIP00000078822	ENSONIP00000006560	Stabilin 1.	Chordin-like 2.	0.532
I3J1Y4_ORENI	I3JF61_ORENI	ENSONIP00000002874	ENSONIP00000055973	FAM20C golgi associated secretory pathway kinase a.	Bone morphogenetic protein 16.	0.485
I3J1Y4_ORENI	I3KV71_ORENI	ENSONIP00000002874	ENSONIP00000025017	FAM20C golgi associated secretory pathway kinase a.	FAM20A golgi associated secretory pathway pseudokinase.	0.922
I3J1Y4_ORENI	bmp2	ENSONIP00000002874	ENSONIP00000001213	FAM20C golgi associated secretory pathway kinase a.	Bone morphogenetic protein 2b.	0.485
I3J1Y4_ORENI	bmp4	ENSONIP00000002874	ENSONIP00000001723	FAM20C golgi associated secretory pathway kinase a.	Bone morphogenetic protein 4.	0.485
I3J1Y4_ORENI	chrdl2	ENSONIP00000002874	ENSONIP00000006560	FAM20C golgi associated secretory pathway kinase a.	Chordin-like 2.	0.582
I3JF61_ORENI	I3J1Y4_ORENI	ENSONIP00000055973	ENSONIP00000002874	Bone morphogenetic protein 16.	FAM20C golgi associated secretory pathway kinase a.	0.485
I3JF61_ORENI	I3KV71_ORENI	ENSONIP00000055973	ENSONIP00000025017	Bone morphogenetic protein 16.	FAM20A golgi associated secretory pathway pseudokinase.	0.525
I3JF61_ORENI	LOC100706789	ENSONIP00000055973	ENSONIP00000056759	Bone morphogenetic protein 16.	Fam20C domain-containing protein.	0.485
I3JF61_ORENI	TWSG1	ENSONIP00000055973	ENSONIP00000023265	Bone morphogenetic protein 16.	Twisted gastrulation BMP signaling modulator 1.	0.647
I3JF61_ORENI	bmp2	ENSONIP00000055973	ENSONIP00000001213	Bone morphogenetic protein 16.	Bone morphogenetic protein 2b.	0.916
I3JF61_ORENI	chrdl2	ENSONIP00000055973	ENSONIP00000006560	Bone morphogenetic protein 16.	Chordin-like 2.	0.543
I3KV71_ORENI	I3J1Y4_ORENI	ENSONIP00000025017	ENSONIP00000002874	FAM20A golgi associated secretory pathway pseudokinase.	FAM20C golgi associated secretory pathway kinase a.	0.922
I3KV71_ORENI	I3JF61_ORENI	ENSONIP00000025017	ENSONIP00000055973	FAM20A golgi associated secretory pathway pseudokinase.	Bone morphogenetic protein 16.	0.525
I3KV71_ORENI	LOC100706789	ENSONIP00000025017	ENSONIP00000056759	FAM20A golgi associated secretory pathway pseudokinase.	Fam20C domain-containing protein.	0.922
I3KV71_ORENI	LOC100708249	ENSONIP00000025017	ENSONIP00000064575	FAM20A golgi associated secretory pathway pseudokinase.	Fam20C domain-containing protein.	0.836
I3KV71_ORENI	bmp2	ENSONIP00000025017	ENSONIP00000001213	FAM20A golgi associated secretory pathway pseudokinase.	Bone morphogenetic protein 2b.	0.525
I3KV71_ORENI	bmp4	ENSONIP00000025017	ENSONIP00000001723	FAM20A golgi associated secretory pathway pseudokinase.	Bone morphogenetic protein 4.	0.525
I3KV71_ORENI	chrdl2	ENSONIP00000025017	ENSONIP00000006560	FAM20A golgi associated secretory pathway pseudokinase.	Chordin-like 2.	0.586
LOC100706789	I3JF61_ORENI	ENSONIP00000056759	ENSONIP00000055973	Fam20C domain-containing protein.	Bone morphogenetic protein 16.	0.485