Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttc9cTetratricopeptide repeat domain 9C. (265 aa)    
Predicted Functional Partners:
dnali1
Dynein, axonemal, light intermediate chain 1.
    
 
 0.779
ruvbl2
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 
 0.772
zmynd10
Zinc finger, MYND-type containing 10.
    
 0.772
dnaaf3
Dynein, axonemal, assembly factor 3 like.
      
 0.760
dnai2
Dynein, axonemal, intermediate chain 2b.
    
 0.755
ccdc39
Uncharacterized protein.
    
 
 0.735
Lrrc6
Leucine rich repeat containing 6.
    
 0.733
ttc26
Tetratricopeptide repeat domain 26.
   
 0.731
dnaaf4
Dynein axonemal assembly factor 4.
      
 0.730
lsm4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 
 0.722
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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