STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100703065Retinal outer segment membrane protein 1b. (365 aa)    
Predicted Functional Partners:
LOC100703904
Retinal outer segment membrane protein 1a.
  
  
0.873
I3KW89_ORENI
Peripherin 2-like a.
  
 
0.714
LOC100698014
Uncharacterized protein.
  
 
0.713
prph2
Peripherin 2a (retinal degeneration, slow).
  
 
0.711
LOC100706449
Peripherin 2b (retinal degeneration, slow).
  
 
0.710
ARR3
Arrestin 3.
   
  
 0.702
LOC100711075
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
  
 0.625
LOC100703259
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
  
 0.605
LOC100695135
Arrestin 3a, retinal (X-arrestin).
   
  
 0.587
grk7
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
   
  
 0.582
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.