Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sgcgSarcoglycan, gamma. (290 aa)    
Predicted Functional Partners:
sspn
Sarcospan (Kras oncogene-associated gene).
   
 0.996
LOC100694800
Sarcoglycan, alpha.
   
 0.989
LOC100699984
Peptidase S72 domain-containing protein.
    
 0.988
dag1
Dystroglycan 1.
    
 0.988
sgcb
Sarcoglycan, beta (dystrophin-associated glycoprotein).
    
 0.987
sgce
Sarcoglycan, epsilon.
   
 0.987
LOC100690306
Uncharacterized protein.
  
0.986
sgcz
Sarcoglycan zeta.
  
0.986
sgcd
Delta-sarcoglycan isoform X1.
  
0.966
sntg1
Syntrophin, gamma 1.
   
 
 0.842
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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