Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
I3JDF3_ORENIIQ motif and ubiquitin domain containing. (653 aa)    
Predicted Functional Partners:
I3J1N4_ORENI
EF-hand calcium binding domain 1.
   
 0.979
Lg12h9orf116
UPF0691 protein C9orf116 homolog.
    
 
 0.976
I3KAM4_ORENI
Armadillo repeat containing 3.
   
 
 0.953
lg22h5orf49
Si:dkeyp-46h3.1.
    
 
 0.935
LOC102079040
Coiled-coil domain containing 96.
   
 
 0.925
Iqcd
Uncharacterized protein.
   
 
 0.925
rsph14
Uncharacterized protein.
   
 
 0.917
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
   
 
 0.914
dnai2
Dynein, axonemal, intermediate chain 2b.
   
 
 0.913
rsph3
Radial spoke head 3.
   
 
 0.912
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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