Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ddx21DEAD (Asp-Glu-Ala-Asp) box helicase 21. (812 aa)    
Predicted Functional Partners:
ebna1bp2
EBNA1 binding protein 2.
   
 0.987
Mybbp1a
MYB binding protein (P160) 1a.
   
 0.981
gnl3
Guanine nucleotide binding protein-like 3 (nucleolar).
  
 0.978
sf3b1
Splicing factor 3b, subunit 1.
   
 0.976
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
   
 0.972
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.969
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.969
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
0.947
larp7
La ribonucleoprotein domain family, member 7.
   
 0.902
dhx36
DEAH (Asp-Glu-Ala-His) box polypeptide 36.
   
 0.885
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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