STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100697497Programmed cell death 10a. (232 aa)    
Predicted Functional Partners:
ccm2
CCM2 scaffold protein.
    
 
 0.923
LOC100701317
MOB family member 4, phocein.
   
 
 0.921
slmap
Sarcolemma associated protein a.
   
 
 0.875
LOC102079138
Uncharacterized protein.
    
 
 0.847
fgfr1op2
FGFR1 oncogene partner 2.
    
 
 0.835
ppp2r1b
Protein phosphatase 2, regulatory subunit A, beta b.
    
 
 0.819
LOC100709543
CTTNBP2 N-terminal like a.
    
 
 0.802
LOC100696724
CTTNBP2 N-terminal like b.
    
 
 0.802
I3KL57_ORENI
Sarcolemma associated protein b.
   
 
 0.793
strip1
Striatin interacting protein 1.
    
 
 0.705
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.