STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcmt1Protein-L-isoaspartate O-methyltransferase. (270 aa)    
Predicted Functional Partners:
borcs5
BLOC-1 related complex subunit 5.
   
  
 0.569
ppp1r14c
Protein phosphatase 1, regulatory (inhibitor) subunit 14C.
      
 0.540
tmem183a
Transmembrane protein 183A.
      
 0.503
nus1
NUS1 dehydrodolichyl diphosphate synthase subunit.
     
 0.502
ttc7a
Tetratricopeptide repeat domain 7A.
      
 0.501
ttc7b
Tetratricopeptide repeat domain 7B.
      
 0.501
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
     
 0.493
LOC100691054
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).
   
  
 0.492
eprs1
Glutamyl-prolyl-tRNA synthetase.
     
 0.484
ak4
GTP:AMP phosphotransferase AK3, mitochondrial; Involved in maintaining the homeostasis of cellular nucleotides by catalyzing the interconversion of nucleoside phosphates. Has GTP:AMP phosphotransferase and ITP:AMP phosphotransferase activities.
   
  
 0.483
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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